/* * Test GPU aware MPI on different platforms using a distributed * 1d stencil on a 2d array. The exchange in second (non-contiguous) * direction forces use of staging buffers, which replicates what * is needed for all but the innermost dimension exchanges in the * GENE fusion code. * * Takes optional command line arg for size of each dimension of the domain * n_global, in 1024 increments. Default is 8 * 1024 (so 256K plus ghost points * in size for doulbles per array), which should fit on any system but may not * be enough to tax larger HPC GPUs and MPI impelmentations. * * There will be four exchange buffers of size 2 * n_global, i.e. 128K each * by default. * * Gtensor is used so a single source can be used for all platforms. */ #include #include #include #include #include #include "gtensor/gtensor.h" #include "gtensor/reductions.h" using namespace gt::placeholders; // little hack to make code parameterizable on managed vs device memory namespace gt { namespace ext { namespace detail { template struct gthelper { using gtensor = gt::gtensor; }; #ifdef GTENSOR_HAVE_DEVICE template struct gthelper { using gtensor = gt::gtensor_container, N>; }; #endif } // namespace detail template using gtensor2 = typename detail::gthelper::gtensor; } // namespace ext } // namespace gt static const gt::gtensor stencil5 = {1.0 / 12.0, -2.0 / 3.0, 0.0, 2.0 / 3.0, -1.0 / 12.0}; /* * Return unevaluated expression that calculates the 1d stencil in the * second dimension of a 2d array. * * Size of the result will be size of z with minus 4 in second dimension. */ inline auto stencil2d_1d_5(const gt::gtensor_device& z, const gt::gtensor& stencil) { return stencil(0) * z.view(_all, _s(0, -4)) + stencil(1) * z.view(_all, _s(1, -3)) + stencil(2) * z.view(_all, _s(2, -2)) + stencil(3) * z.view(_all, _s(3, -1)) + stencil(4) * z.view(_all, _s(4, _)); } void set_rank_device(int n_ranks, int rank) { int n_devices, device, ranks_per_device; n_devices = gt::backend::clib::device_get_count(); if (n_ranks > n_devices) { if (n_ranks % n_devices != 0) { printf( "ERROR: Number of ranks (%d) not a multiple of number of GPUs (%d)\n", n_ranks, n_devices); exit(EXIT_FAILURE); } ranks_per_device = n_ranks / n_devices; device = rank / ranks_per_device; } else { ranks_per_device = 1; device = rank; } gt::backend::clib::device_set(device); } // exchange in non-contiguous second dimension, staging into contiguous buffers // on device void boundary_exchange_y(MPI_Comm comm, int world_size, int rank, gt::gtensor_device& d_z, int n_bnd, bool stage_host = false) { auto buf_shape = gt::shape(d_z.shape(0), n_bnd); gt::gtensor_device sbuf_l(buf_shape); gt::gtensor_device sbuf_r(buf_shape); gt::gtensor_device rbuf_r(buf_shape); gt::gtensor_device rbuf_l(buf_shape); gt::shape_type<2> host_buf_shape; if (stage_host) { host_buf_shape = buf_shape; } else { host_buf_shape = {0, 0}; } gt::gtensor h_sbuf_l(host_buf_shape); gt::gtensor h_sbuf_r(host_buf_shape); gt::gtensor h_rbuf_r(host_buf_shape); gt::gtensor h_rbuf_l(host_buf_shape); MPI_Request req_l[2]; MPI_Request req_r[2]; int rank_l = rank - 1; int rank_r = rank + 1; // start async copy of ghost points into send buffers if (rank_l >= 0) { sbuf_l = d_z.view(_all, _s(n_bnd, 2 * n_bnd)); if (stage_host) { gt::copy(sbuf_l, h_sbuf_l); } } if (rank_r <= world_size) { sbuf_r = d_z.view(_all, _s(-2 * n_bnd, -n_bnd)); if (stage_host) { gt::copy(sbuf_r, h_sbuf_r); } } // initiate async recv if (rank_l >= 0) { double* rbuf_l_data = nullptr; if (stage_host) { rbuf_l_data = h_rbuf_l.data(); } else { rbuf_l_data = rbuf_l.data().get(); } MPI_Irecv(rbuf_l_data, rbuf_l.size(), MPI_DOUBLE, rank_l, 123, comm, &req_l[0]); } if (rank_r < world_size) { double* rbuf_r_data = nullptr; if (stage_host) { rbuf_r_data = h_rbuf_r.data(); } else { rbuf_r_data = rbuf_r.data().get(); } MPI_Irecv(rbuf_r_data, rbuf_r.size(), MPI_DOUBLE, rank_r, 456, comm, &req_r[0]); } // wait for send buffer fill gt::synchronize(); // initiate async sends if (rank_l >= 0) { double* sbuf_l_data = nullptr; if (stage_host) { sbuf_l_data = h_sbuf_l.data(); } else { sbuf_l_data = sbuf_l.data().get(); } MPI_Isend(sbuf_l_data, sbuf_l.size(), MPI_DOUBLE, rank_l, 456, comm, &req_l[1]); } if (rank_r < world_size) { double* sbuf_r_data = nullptr; if (stage_host) { sbuf_r_data = h_sbuf_r.data(); } else { sbuf_r_data = sbuf_r.data().get(); } MPI_Isend(sbuf_r_data, sbuf_r.size(), MPI_DOUBLE, rank_r, 123, comm, &req_r[1]); } // wait for send/recv to complete, then copy data back into main data array int mpi_rval; if (rank_l >= 0) { mpi_rval = MPI_Waitall(2, req_l, MPI_STATUSES_IGNORE); if (mpi_rval != MPI_SUCCESS) { printf("send_l error: %d\n", mpi_rval); } if (stage_host) { gt::copy(h_rbuf_l, rbuf_l); } d_z.view(_all, _s(0, n_bnd)) = rbuf_l; } if (rank_r < world_size) { mpi_rval = MPI_Waitall(2, req_r, MPI_STATUSES_IGNORE); if (mpi_rval != MPI_SUCCESS) { printf("send_r error: %d\n", mpi_rval); } if (stage_host) { gt::copy(h_rbuf_r, rbuf_r); } d_z.view(_all, _s(-n_bnd, _)) = rbuf_r; } gt::synchronize(); } int main(int argc, char** argv) { // Note: domain will be n_global x n_global plus ghost points in one dimension int n_global = 8 * 1024; bool stage_host = false; int n_iter = 100; int n_warmup = 5; if (argc > 1) { n_global = std::atoi(argv[1]) * 1024; } if (argc > 2) { if (argv[2][0] == '1') { stage_host = true; } } if (argc > 3) { n_iter = std::atoi(argv[3]); } int n_sten = 5; int n_bnd = (n_sten - 1) / 2; int world_size, world_rank, device_id; uint32_t vendor_id; MPI_Init(NULL, NULL); MPI_Comm_size(MPI_COMM_WORLD, &world_size); MPI_Comm_rank(MPI_COMM_WORLD, &world_rank); if (n_global % world_size != 0) { printf("%d nmpi (%d) must be divisor of domain size (%d), exiting\n", world_rank, world_size, n_global); exit(1); } const int n_local = n_global / world_size; const int n_local_with_ghost = n_local + 2 * n_bnd; set_rank_device(world_size, world_rank); device_id = gt::backend::clib::device_get(); vendor_id = gt::backend::clib::device_get_vendor_id(device_id); if (world_rank == 0) { printf("n procs = %d\n", world_size); printf("n_global = %d\n", n_global); printf("n_local = %d\n", n_local); printf("n_iter = %d\n", n_iter); printf("n_warmup = %d\n", n_warmup); printf("stage_host = %d\n", stage_host); } auto h_z = gt::empty({n_global, n_local_with_ghost}); auto d_z = gt::empty_device({n_global, n_local_with_ghost}); auto h_dzdy_numeric = gt::empty({n_global, n_local}); auto h_dzdy_actual = gt::empty({n_global, n_local}); auto d_dzdy_numeric = gt::empty_device({n_global, n_local}); double lx = 8; double dx = lx / n_global; double lx_local = lx / world_size; double scale = n_global / lx; auto fn = [](double x, double y) { return x * x + y * y; }; auto fn_dzdy = [](double x, double y) { return 2 * x; }; struct timespec start, end; double iter_time = 0.0; double total_time = 0.0; double x_start = world_rank * lx_local; for (int i = 0; i < n_local; i++) { double xtmp = x_start + i * dx; for (int j = 0; j < n_global; j++) { double ytmp = j * dx; h_z(j, i + n_bnd) = fn(xtmp, ytmp); h_dzdy_actual(j, i) = fn_dzdy(xtmp, ytmp); } } // fill boundary points on ends if (world_rank == 0) { for (int i = 0; i < n_bnd; i++) { double xtmp = (i - n_bnd) * dx; for (int j = 0; j < n_global; j++) { double ytmp = j * dx; h_z(j, i) = fn(xtmp, ytmp); } } } if (world_rank == world_size - 1) { for (int i = 0; i < n_bnd; i++) { double xtmp = lx + i * dx; for (int j = 0; j < n_global; j++) { double ytmp = j * dx; h_z(j, n_bnd + n_local + i) = fn(xtmp, ytmp); } } } for (int i = 0; i < 5; i++) { printf("%d row1-l %f\n", world_rank, h_z(1, i)); } for (int i = 0; i < 5; i++) { printf("%d row1-r %f\n", world_rank, h_z(1, n_local_with_ghost - 1 - i)); } gt::copy(h_z, d_z); // gt::synchronize(); for (int i = 0; i < n_warmup + n_iter; i++) { clock_gettime(CLOCK_MONOTONIC, &start); boundary_exchange_y(MPI_COMM_WORLD, world_size, world_rank, d_z, n_bnd, stage_host); clock_gettime(CLOCK_MONOTONIC, &end); iter_time = ((end.tv_sec - start.tv_sec) + (end.tv_nsec - start.tv_nsec) * 1.0e-9); if (i >= n_warmup) { total_time += iter_time; } // do some calculation, to try to more closely simulate what happens in GENE d_dzdy_numeric = stencil2d_1d_5(d_z, stencil5) * scale; gt::synchronize(); } printf("%d/%d exchange time %0.8f\n", world_rank, world_size, total_time / n_iter); gt::copy(d_dzdy_numeric, h_dzdy_numeric); gt::synchronize(); for (int i = 0; i < 5; i++) { printf("%d la %f\n%d ln %f\n", world_rank, h_dzdy_actual(8, i), world_rank, h_dzdy_numeric(8, i)); } for (int i = 0; i < 5; i++) { int idx = n_local - 1 - i; printf("%d ra %f\n%d rn %f\n", world_rank, h_dzdy_actual(8, idx), world_rank, h_dzdy_numeric(8, idx)); } double err_norm = std::sqrt(gt::sum_squares(h_dzdy_numeric - h_dzdy_actual)); printf("%d/%d [%d:0x%08x] err_norm = %.8f\n", world_rank, world_size, device_id, vendor_id, err_norm); MPI_Finalize(); return EXIT_SUCCESS; }