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fixes for sycl port

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Bryce Allen 3 years ago
parent 55bb0d26d1
commit 936f0851c8
2 changed files with 164 additions and 38 deletions
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36
mpi_stencil2d_gt.cc
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@ -106,7 +106,7 @@ void set_rank_device(int n_ranks, int rank)
// on device
void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
gt::gtensor_device<double, 2>& d_z, int n_bnd,
bool stage_host=false)
bool stage_host = false)
{
auto buf_shape = gt::shape(d_z.shape(0), n_bnd);
gt::gtensor_device<double, 2> sbuf_l(buf_shape);
@ -118,7 +118,7 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
if (stage_host) {
host_buf_shape = buf_shape;
} else {
host_buf_shape = { 0, 0 };
host_buf_shape = {0, 0};
}
gt::gtensor<double, 2> h_sbuf_l(host_buf_shape);
gt::gtensor<double, 2> h_sbuf_r(host_buf_shape);
@ -147,7 +147,7 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
// initiate async recv
if (rank_l >= 0) {
double *rbuf_l_data = nullptr;
double* rbuf_l_data = nullptr;
if (stage_host) {
rbuf_l_data = h_rbuf_l.data();
} else {
@ -158,7 +158,7 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
}
if (rank_r < world_size) {
double *rbuf_r_data = nullptr;
double* rbuf_r_data = nullptr;
if (stage_host) {
rbuf_r_data = h_rbuf_r.data();
} else {
@ -173,7 +173,7 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
// initiate async sends
if (rank_l >= 0) {
double *sbuf_l_data = nullptr;
double* sbuf_l_data = nullptr;
if (stage_host) {
sbuf_l_data = h_sbuf_l.data();
} else {
@ -184,7 +184,7 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
}
if (rank_r < world_size) {
double *sbuf_r_data = nullptr;
double* sbuf_r_data = nullptr;
if (stage_host) {
sbuf_r_data = h_sbuf_r.data();
} else {
@ -320,12 +320,22 @@ int main(int argc, char** argv)
}
}
/*
for (int i = 0; i < 5; i++) {
printf("%d row1-l %f\n", world_rank, h_z(1, i));
}
for (int i = 0; i < 5; i++) {
printf("%d row1-r %f\n", world_rank, h_z(1, n_local_with_ghost - 1 - i));
}
*/
gt::copy(h_z, d_z);
// gt::synchronize();
for (int i = 0; i < n_warmup + n_iter; i++) {
clock_gettime(CLOCK_MONOTONIC, &start);
boundary_exchange_y(MPI_COMM_WORLD, world_size, world_rank, d_z, n_bnd, stage_host);
boundary_exchange_y(MPI_COMM_WORLD, world_size, world_rank, d_z, n_bnd,
stage_host);
clock_gettime(CLOCK_MONOTONIC, &end);
iter_time =
((end.tv_sec - start.tv_sec) + (end.tv_nsec - start.tv_nsec) * 1.0e-9);
@ -338,20 +348,20 @@ int main(int argc, char** argv)
d_dzdy_numeric = stencil2d_1d_5(d_z, stencil5) * scale;
gt::synchronize();
}
printf("%d/%d exchange time %0.8f\n", world_rank, world_size, total_time / n_iter);
printf("%d/%d exchange time %0.8f\n", world_rank, world_size,
total_time / n_iter);
gt::copy(d_dzdy_numeric, h_dzdy_numeric);
// gt::synchronize();
/*
for (int i = 0; i < 5; i++) {
printf("{0} l {1}\n{0} l {2}\n", world_rank, h_dzdy_actual(i),
h_dzdy_numeric(i));
printf("%d la %f\n%d ln %f\n", world_rank, h_dzdy_actual(8, i), world_rank,
h_dzdy_numeric(8, i));
}
for (int i = 0; i < 5; i++) {
int idx = n_local - 1 - i;
printf("{0} r {1}\n{0} r {2}\n", world_rank, h_dzdy_actual(idx),
h_dzdy_numeric(idx));
printf("%d ra %f\n%d rn %f\n", world_rank, h_dzdy_actual(8, idx),
world_rank, h_dzdy_numeric(8, idx));
}
*/

166
mpi_stencil2d_sycl.cc
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@ -48,14 +48,14 @@ auto stencil2d_1d_5(sycl::queue& q, int nrows, int ncols, double* out2d,
cgh.parallel_for(range, [=](sycl::item<2> item) {
int row = item.get_id(1);
int col = item.get_id(0);
int in_idx = idx2(nrows, row, col);
int stride = ncols + 4;
out2d[idx2(nrows, row, col)] = (stencil5[0] * in2d[in_idx + 0 * stride] +
stencil5[1] * in2d[in_idx + 1 * stride] +
stencil5[2] * in2d[in_idx + 2 * stride] +
stencil5[3] * in2d[in_idx + 3 * stride] +
stencil5[4] * in2d[in_idx + 4 * stride]) *
scale;
int base_idx = idx2(nrows, row, col);
int stride = nrows;
out2d[base_idx] = (stencil5[0] * in2d[base_idx + 0 * stride] +
stencil5[1] * in2d[base_idx + 1 * stride] +
stencil5[2] * in2d[base_idx + 2 * stride] +
stencil5[3] * in2d[base_idx + 3 * stride] +
stencil5[4] * in2d[base_idx + 4 * stride]) *
scale;
});
});
return e;
@ -69,7 +69,8 @@ auto stencil2d_1d_5(sycl::queue& q, int nrows, int ncols, double* out2d,
auto buf_from_view(sycl::queue& q, int nrows, double* buf, double* in,
int start, int end)
{
auto range = sycl::range<2>(end - start + 1, nrows);
// Note: reverse index order because SYCL is row-major
auto range = sycl::range<2>(end - start, nrows);
auto e = q.submit([&](sycl::handler& cgh) {
cgh.parallel_for(range, [=](sycl::item<2> item) {
int row = item.get_id(1);
@ -83,12 +84,14 @@ auto buf_from_view(sycl::queue& q, int nrows, double* buf, double* in,
/*
* Copy contiguous buffer into second (non-contiguous) dimension of array as a
* slice. Out has dimension nrows x ncols, buf has dimension nrows x (end -
* start + 1).
* start + 1). ncols is not actually needed or used, just need start to end
* to be valid indexes.
*/
auto buf_to_view(sycl::queue& q, int nrows, double* out, double* buf, int start,
int end)
{
auto range = sycl::range<2>(end - start + 1, nrows);
// Note: reverse index order because SYCL is row-major
auto range = sycl::range<2>(end - start, nrows);
auto e = q.submit([&](sycl::handler& cgh) {
cgh.parallel_for(range, [=](sycl::item<2> item) {
int row = item.get_id(1);
@ -99,6 +102,47 @@ auto buf_to_view(sycl::queue& q, int nrows, double* out, double* buf, int start,
return e;
}
void test_buf_view(sycl::queue& q, const int n)
{
double* data = sycl::malloc_host<double>(n * n, q);
double* buf = sycl::malloc_host<double>(n * 2, q);
double* buf2 = sycl::malloc_host<double>(n * 2, q);
for (int i = 0; i < n; i++) {
for (int j = 0; j < n; j++) {
data[j + i * n] = i + j / 1000.0;
}
buf2[i] = 100.0 + i;
buf2[i + n] = 100.0 + i + 0.1;
}
for (int i = 0; i < n; i++) {
for (int j = 0; j < n; j++) {
printf("data[%d, %d] = %f\n", j, i, data[j + i * n]);
}
}
for (int i = 0; i < 2; i++) {
for (int j = 0; j < n; j++) {
printf("buf2[%d, %d] = %f\n", j, i, buf2[j + i * n]);
}
}
buf_from_view(q, n, buf, data, 0, 2).wait();
for (int i = 0; i < 2; i++) {
for (int j = 0; j < n; j++) {
printf("buf[%d, %d] = %f\n", j, i, buf[j + i * n]);
}
}
buf_to_view(q, n, data, buf2, n - 2, n).wait();
for (int i = 0; i < n; i++) {
for (int j = 0; j < n; j++) {
printf("data[%d, %d] = %f\n", j, i, data[j + i * n]);
}
}
}
/*
* Calculate the norm of the difference of two arrays, as sqrt of sum of
* squared distances.
@ -143,6 +187,9 @@ sycl::queue get_rank_queue(int n_ranks, int rank)
device_idx = rank;
}
// printf("n_devices = %d\n", n_devices);
// printf("device_idx = %d\n", device_idx);
return sycl::queue{devices[device_idx],
cl::sycl::property::queue::in_order()};
}
@ -185,17 +232,37 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
// start async copy of ghost points into send buffers
if (rank_l >= 0) {
// printf("rank_l = %d\n", rank_l); fflush(nullptr);
// sbuf_l = d_z.view(_all, _s(n_bnd, 2 * n_bnd));
buf_from_view(q, n_global, sbuf_l, d_z, n_bnd, 2 * n_bnd);
auto e = buf_from_view(q, n_global, sbuf_l, d_z, n_bnd, 2 * n_bnd);
if (stage_host) {
q.copy(sbuf_l, h_sbuf_l, buf_size);
q.copy(sbuf_l, h_sbuf_l, buf_size, e);
/*
for (int i = 0; i < n_bnd; i++) {
for (int j = 0; j < n_global; j++) {
int idx = idx2(n_global, j, i);
printf("sbuf_l[%d, %d] = %f\n", j, i, h_sbuf_l[idx]);
fflush(nullptr);
}
}
*/
}
}
if (rank_r <= world_size) {
if (rank_r < world_size) {
// printf("rank_r = %d\n", rank_r); fflush(nullptr);
// sbuf_r = d_z.view(_all, _s(-2 * n_bnd, -n_bnd));
buf_from_view(q, n_global, sbuf_l, d_z, n_local, n_local + n_bnd);
auto e = buf_from_view(q, n_global, sbuf_r, d_z, n_local, n_local + n_bnd);
if (stage_host) {
q.copy(sbuf_r, h_sbuf_r, buf_size);
q.copy(sbuf_r, h_sbuf_r, buf_size, e);
/*
for (int i = 0; i < n_bnd; i++) {
for (int j = 0; j < n_global; j++) {
int idx = idx2(n_global, j, i);
printf("sbuf_r[%d, %d] = %f\n", j, i, h_sbuf_r[idx]);
fflush(nullptr);
}
}
*/
}
}
@ -252,6 +319,15 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
printf("send_l error: %d\n", mpi_rval);
}
if (stage_host) {
/*
for (int i = 0; i < n_bnd; i++) {
for (int j = 0; j < n_global; j++) {
int idx = idx2(n_global, j, i);
printf("rbuf_l[%d, %d] = %f\n", j, i, h_rbuf_l[idx]);
fflush(nullptr);
}
}
*/
q.copy(h_rbuf_l, rbuf_l, buf_size);
}
// d_z.view(_all, _s(0, n_bnd)) = rbuf_l;
@ -263,6 +339,15 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
printf("send_r error: %d\n", mpi_rval);
}
if (stage_host) {
/*
for (int i = 0; i < n_bnd; i++) {
for (int j = 0; j < n_global; j++) {
int idx = idx2(n_global, j, i);
printf("rbuf_r[%d, %d] = %f\n", j, i, h_rbuf_r[idx]);
fflush(nullptr);
}
}
*/
q.copy(h_rbuf_r, rbuf_r, buf_size);
}
// d_z.view(_all, _s(-n_bnd, _)) = rbuf_r;
@ -274,6 +359,10 @@ void boundary_exchange_y(MPI_Comm comm, int world_size, int rank,
int main(int argc, char** argv)
{
// sycl::queue q2{};
// test_buf_view(q2, 6);
// return EXIT_SUCCESS;
// Note: domain will be n_global x n_global plus ghost points in one dimension
int n_global = 8 * 1024;
bool stage_host = false;
@ -315,6 +404,7 @@ int main(int argc, char** argv)
if (world_rank == 0) {
printf("n procs = %d\n", world_size);
printf("rank = %d\n", world_rank);
printf("n_global = %d\n", n_global);
printf("n_local = %d\n", n_local);
printf("n_iter = %d\n", n_iter);
@ -322,12 +412,15 @@ int main(int argc, char** argv)
printf("stage_host = %d\n", stage_host);
}
double* h_z = sycl::malloc_host<double>(n_global * n_local_with_ghost, q);
double* d_z = sycl::malloc_device<double>(n_global * n_local_with_ghost, q);
int z_size = n_global * n_local_with_ghost;
int dzdy_size = n_global * n_local;
double* h_z = sycl::malloc_host<double>(z_size, q);
double* d_z = sycl::malloc_device<double>(z_size, q);
double* h_dzdy_numeric = sycl::malloc_host<double>(n_global * n_local, q);
double* h_dzdy_actual = sycl::malloc_host<double>(n_global * n_local, q);
double* d_dzdy_numeric = sycl::malloc_device<double>(n_global * n_local, q);
double* h_dzdy_numeric = sycl::malloc_host<double>(dzdy_size, q);
double* h_dzdy_actual = sycl::malloc_host<double>(dzdy_size, q);
double* d_dzdy_numeric = sycl::malloc_device<double>(dzdy_size, q);
double lx = 8;
double dx = lx / n_global;
@ -370,7 +463,18 @@ int main(int argc, char** argv)
}
}
q.copy(h_z, d_z, n_global * n_local_with_ghost);
/*
for (int i = 0; i < 5; i++) {
int idx = idx2(n_global, 1, i);
printf("%d row1-l %f\n", world_rank, h_z[idx]);
}
for (int i = 0; i < 5; i++) {
int idx = idx2(n_global, 1, n_local_with_ghost - 1 - i);
printf("%d row1-r %f\n", world_rank, h_z[idx]);
}
*/
q.copy(h_z, d_z, z_size);
for (int i = 0; i < n_warmup + n_iter; i++) {
clock_gettime(CLOCK_MONOTONIC, &start);
@ -391,10 +495,22 @@ int main(int argc, char** argv)
printf("%d/%d exchange time %0.8f\n", world_rank, world_size,
total_time / n_iter);
q.copy(d_dzdy_numeric, h_dzdy_numeric, n_global * n_local);
q.copy(d_dzdy_numeric, h_dzdy_numeric, dzdy_size).wait();
/*
for (int i = 0; i < 5; i++) {
int idx = idx2(n_global, 8, i);
printf("%d la %f\n%d ln %f\n", world_rank, h_dzdy_actual[idx], world_rank,
h_dzdy_numeric[idx]);
}
for (int i = 0; i < 5; i++) {
int idx = idx2(n_global, 8, n_local - 1 - i);
printf("%d ra %f\n%d rn %f\n", world_rank, h_dzdy_actual[idx], world_rank,
h_dzdy_numeric[idx]);
}
*/
double err_norm =
diff_norm(q, n_global * n_local, h_dzdy_numeric, h_dzdy_actual);
double err_norm = diff_norm(q, dzdy_size, h_dzdy_numeric, h_dzdy_actual);
printf("%d/%d [%d:0x%08x] err_norm = %.8f\n", world_rank, world_size,
device_id, vendor_id, err_norm);

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